SangerAlignment Level

SangerContig Level

SangerRead Level

Basic Information:

  • Output Directory : C:_ACHLO006-09/Achl_ACHLO006-09_2_R
  • Input Directory : C:/Users/dell/AppData/Local/R/win-library/4.2/sangeranalyseR/extdata/Allolobophora_chlorotica/ACHLO/.
  • Input Filename : Achl_ACHLO006-09_2_R.ab1
  • Read Feature : Reverse Read

DNA Seqence

Primary Sequence

Secondary Sequence

Phred Quality Scores

Amino Acids Sequence

Amino Acids Sequence frameshit 0

Amino Acids Sequence frameshit 1

Amino Acids Sequence frameshit 2

Quality Trimming

  • Trimming Method: Method 1 ‘Logarithmic Scale Trimming’
  • M1 Trimming Cutoff: 1e-04
  • Raw Sequence Length: 705
  • Trimmed Sequence Length: 640
  • Trimmed Start Point: 18
  • Trimmed End Point: 658
  • Raw Mean Quality Score: 54.8510638
  • Trimmed Mean Quality Score: 57.2953125
  • Raw Min Quality Score: 3
  • Trimmed Min Quality Score: 6
  • Remaining Read Ratio: 90.78 %

Chromatogram

  • Signal Ratio Cutoff: 0.33
  • Base Number Per Row: 100
  • Height Per Row: 200
  • Show Trimmed Region: TRUE 
## Chromatogram saved to C:\Users\dell\AppData\Local\Temp\RtmpWKmTTv\SangerAlignment\Achl_ACHLO006-09/Achl_ACHLO006-09_2_R/Chromatogram.pdf in the current working directory

Click Here to Open Chromatogram in New Page




Back to ‘SangerContig’ Report